## ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/format_rsf_data_for_nimble.R
## value ?
## visible FALSE
## ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/get_new_id.R
## value ?
## visible FALSE
## ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/make_prediction.R
## value ?
## visible FALSE
## ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/plot_PPC_Nmixture.R
## value ?
## visible FALSE
## ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/plot_prediction.R
## value ?
## visible FALSE
## ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/prepare_data_Nmix.R
## value ?
## visible FALSE
## ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/run_integrated_Nmix_RSF.R
## value ?
## visible FALSE
## ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/run_Nmixture.R
## value ?
## visible FALSE
## ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/run_RSF.R
## value ?
## visible FALSE


| alpha[1, 1] |
-4.80 |
0.31 |
-5.43 |
-4.80 |
-4.21 |
1 |
4675 |
| alpha[2, 1] |
0.30 |
0.22 |
-0.13 |
0.31 |
0.73 |
1 |
49844 |
| alpha[1, 2] |
-4.66 |
0.25 |
-5.15 |
-4.66 |
-4.19 |
1 |
2687 |
| alpha[2, 2] |
0.59 |
0.09 |
0.41 |
0.59 |
0.77 |
1 |
25128 |
| alpha[1, 3] |
-4.03 |
0.28 |
-4.59 |
-4.03 |
-3.51 |
1 |
3898 |
| alpha[2, 3] |
0.80 |
0.22 |
0.38 |
0.80 |
1.25 |
1 |
21815 |
| alpha[1, 4] |
-3.19 |
0.21 |
-3.62 |
-3.18 |
-2.78 |
1 |
1755 |
| alpha[2, 4] |
0.50 |
0.08 |
0.36 |
0.50 |
0.66 |
1 |
16948 |
| beta[1] |
-0.10 |
0.24 |
-0.56 |
-0.10 |
0.38 |
1 |
1985 |
| beta[2] |
-0.77 |
0.24 |
-1.25 |
-0.77 |
-0.31 |
1 |
5131 |
| beta[3] |
-1.19 |
0.25 |
-1.70 |
-1.18 |
-0.72 |
1 |
5557 |


Goéland leucophée / Yellow-legged gull
Hors repro


| alpha[1, 1] |
-4.97 |
0.18 |
-5.33 |
-4.97 |
-4.63 |
1.02 |
131 |
| alpha[2, 1] |
0.70 |
0.03 |
0.65 |
0.70 |
0.76 |
1.00 |
13848 |
| alpha[1, 2] |
-5.86 |
0.19 |
-6.25 |
-5.86 |
-5.50 |
1.02 |
305 |
| alpha[2, 2] |
0.75 |
0.05 |
0.65 |
0.75 |
0.86 |
1.00 |
16498 |
| alpha[1, 3] |
-7.24 |
0.18 |
-7.61 |
-7.24 |
-6.89 |
1.02 |
152 |
| alpha[2, 3] |
1.05 |
0.03 |
1.00 |
1.05 |
1.11 |
1.00 |
7764 |
| beta[1] |
7.02 |
0.20 |
6.64 |
7.02 |
7.41 |
1.02 |
371 |
| beta[2] |
-1.14 |
0.13 |
-1.39 |
-1.14 |
-0.90 |
1.00 |
7534 |
| beta[3] |
-0.63 |
0.21 |
-1.05 |
-0.63 |
-0.22 |
1.00 |
5841 |
| beta[4] |
-0.71 |
0.24 |
-1.18 |
-0.71 |
-0.24 |
1.00 |
7151 |
| beta[5] |
-0.01 |
0.11 |
-0.22 |
-0.01 |
0.21 |
1.00 |
6767 |
| beta[6] |
-0.45 |
0.12 |
-0.69 |
-0.45 |
-0.20 |
1.00 |
7601 |
| beta[7] |
1.11 |
0.23 |
0.65 |
1.11 |
1.55 |
1.00 |
6899 |


Repro


| alpha[1, 1] |
-5.36 |
0.19 |
-5.79 |
-5.35 |
-5.01 |
1.02 |
124 |
| alpha[2, 1] |
0.46 |
0.02 |
0.42 |
0.46 |
0.50 |
1.00 |
18981 |
| alpha[1, 2] |
-6.08 |
0.19 |
-6.50 |
-6.07 |
-5.72 |
1.02 |
122 |
| alpha[2, 2] |
0.19 |
0.01 |
0.17 |
0.19 |
0.22 |
1.00 |
31875 |
| alpha[1, 3] |
-5.59 |
0.20 |
-6.02 |
-5.58 |
-5.23 |
1.02 |
143 |
| alpha[2, 3] |
0.11 |
0.04 |
0.04 |
0.11 |
0.18 |
1.00 |
29122 |
| beta[1] |
6.81 |
0.20 |
6.44 |
6.81 |
7.25 |
1.02 |
201 |
| beta[2] |
-0.58 |
0.09 |
-0.75 |
-0.58 |
-0.41 |
1.00 |
12715 |
| beta[3] |
-0.85 |
0.17 |
-1.19 |
-0.85 |
-0.51 |
1.00 |
12343 |
| beta[4] |
-0.34 |
0.08 |
-0.50 |
-0.34 |
-0.18 |
1.00 |
13215 |
| beta[5] |
0.95 |
0.17 |
0.60 |
0.95 |
1.28 |
1.00 |
12159 |


Mouette melanocephale
Hors repro


| alpha[1, 1] |
-2.78 |
0.25 |
-3.28 |
-2.77 |
-2.28 |
1 |
875 |
| alpha[2, 1] |
0.27 |
0.08 |
0.11 |
0.27 |
0.43 |
1 |
13646 |
| alpha[1, 2] |
-3.91 |
0.28 |
-4.48 |
-3.91 |
-3.36 |
1 |
1582 |
| alpha[2, 2] |
0.31 |
0.14 |
0.03 |
0.31 |
0.60 |
1 |
30989 |
| alpha[1, 3] |
-4.66 |
0.26 |
-5.19 |
-4.66 |
-4.16 |
1 |
892 |
| alpha[2, 3] |
0.56 |
0.08 |
0.40 |
0.56 |
0.73 |
1 |
14495 |
| beta[1] |
2.75 |
0.26 |
2.25 |
2.74 |
3.26 |
1 |
839 |
| beta[2] |
0.04 |
0.20 |
-0.35 |
0.04 |
0.43 |
1 |
7422 |
| beta[3] |
0.24 |
0.13 |
-0.01 |
0.24 |
0.49 |
1 |
8128 |
| beta[4] |
-0.96 |
0.27 |
-1.49 |
-0.96 |
-0.44 |
1 |
7402 |
| beta[5] |
1.07 |
0.25 |
0.59 |
1.07 |
1.56 |
1 |
7590 |

Repro


| alpha[1, 1] |
-2.88 |
0.28 |
-3.47 |
-2.87 |
-2.37 |
1 |
982 |
| alpha[2, 1] |
0.17 |
0.08 |
0.00 |
0.17 |
0.33 |
1 |
19767 |
| alpha[1, 2] |
-5.00 |
0.29 |
-5.62 |
-4.99 |
-4.45 |
1 |
1135 |
| alpha[2, 2] |
0.78 |
0.08 |
0.63 |
0.78 |
0.94 |
1 |
17541 |
| beta[1] |
2.19 |
0.28 |
1.68 |
2.18 |
2.77 |
1 |
1032 |
| beta[2] |
-0.62 |
0.12 |
-0.86 |
-0.62 |
-0.39 |
1 |
11568 |

Mouette pygmée / Little gull


| alpha[1, 1] |
-5.10 |
0.22 |
-5.54 |
-5.08 |
-4.72 |
1.07 |
133 |
| alpha[2, 1] |
0.02 |
0.02 |
-0.02 |
0.02 |
0.05 |
1.00 |
14742 |
| alpha[1, 2] |
-8.23 |
0.23 |
-8.70 |
-8.21 |
-7.82 |
1.05 |
264 |
| alpha[2, 2] |
0.48 |
0.05 |
0.38 |
0.48 |
0.58 |
1.00 |
10225 |
| beta[1] |
7.30 |
0.24 |
6.87 |
7.29 |
7.79 |
1.05 |
422 |
| beta[2] |
1.24 |
0.25 |
0.76 |
1.24 |
1.73 |
1.00 |
4809 |
| beta[3] |
-0.19 |
0.36 |
-0.89 |
-0.19 |
0.53 |
1.00 |
5277 |
| beta[4] |
0.20 |
0.29 |
-0.37 |
0.20 |
0.77 |
1.00 |
5213 |
| beta[5] |
0.10 |
0.22 |
-0.33 |
0.10 |
0.54 |
1.00 |
5368 |
| beta[6] |
0.60 |
0.32 |
-0.02 |
0.59 |
1.22 |
1.00 |
4947 |
| beta[7] |
0.47 |
0.26 |
-0.04 |
0.47 |
0.97 |
1.00 |
5193 |
| beta[8] |
0.00 |
0.37 |
-0.72 |
0.00 |
0.73 |
1.00 |
5302 |
| beta[9] |
-1.06 |
0.39 |
-1.83 |
-1.06 |
-0.30 |
1.00 |
4754 |
| beta[10] |
-0.22 |
0.24 |
-0.69 |
-0.22 |
0.26 |
1.00 |
5162 |
| beta[11] |
0.28 |
0.26 |
-0.23 |
0.29 |
0.79 |
1.00 |
5051 |


Mouette rieuse / Black-headed gull


| alpha[1, 1] |
-3.64 |
0.43 |
-4.51 |
-3.63 |
-2.84 |
1.00 |
6129 |
| alpha[2, 1] |
1.13 |
0.20 |
0.75 |
1.12 |
1.54 |
1.00 |
6915 |
| alpha[1, 2] |
-1.04 |
0.47 |
-1.99 |
-1.04 |
-0.12 |
1.00 |
7352 |
| alpha[2, 2] |
1.28 |
0.47 |
0.45 |
1.24 |
2.29 |
1.00 |
17109 |
| alpha[1, 3] |
-3.29 |
0.38 |
-4.06 |
-3.28 |
-2.55 |
1.00 |
4098 |
| alpha[2, 3] |
0.62 |
0.15 |
0.35 |
0.61 |
0.92 |
1.00 |
14861 |
| beta[1] |
-1.85 |
0.37 |
-2.58 |
-1.85 |
-1.13 |
1.01 |
2504 |
| beta[2] |
-0.74 |
0.36 |
-1.45 |
-0.74 |
-0.03 |
1.00 |
3988 |
| beta[3] |
-0.26 |
0.57 |
-1.42 |
-0.24 |
0.83 |
1.00 |
3718 |
| beta[4] |
0.32 |
0.46 |
-0.60 |
0.32 |
1.22 |
1.00 |
5287 |
| beta[5] |
-0.84 |
0.44 |
-1.70 |
-0.84 |
0.03 |
1.00 |
4598 |


Océanite tempête / Storm petrel


| alpha[1, 1] |
-2.30 |
0.34 |
-2.99 |
-2.30 |
-1.64 |
1.00 |
2876 |
| alpha[2, 1] |
0.12 |
0.17 |
-0.21 |
0.13 |
0.45 |
1.00 |
23187 |
| alpha[1, 2] |
-2.92 |
0.35 |
-3.61 |
-2.91 |
-2.25 |
1.00 |
3047 |
| alpha[2, 2] |
0.42 |
0.16 |
0.11 |
0.41 |
0.73 |
1.00 |
22412 |
| alpha[1, 3] |
-1.75 |
0.57 |
-2.86 |
-1.75 |
-0.61 |
1.00 |
7837 |
| alpha[2, 3] |
0.53 |
0.57 |
-0.56 |
0.51 |
1.70 |
1.00 |
35020 |
| beta[1] |
-0.58 |
0.31 |
-1.17 |
-0.58 |
0.05 |
1.01 |
2421 |
| beta[2] |
1.11 |
0.30 |
0.52 |
1.10 |
1.71 |
1.00 |
5583 |
| beta[3] |
0.39 |
0.41 |
-0.39 |
0.38 |
1.20 |
1.00 |
5641 |
| beta[4] |
0.47 |
0.20 |
0.08 |
0.46 |
0.87 |
1.00 |
5414 |
| beta[5] |
-0.06 |
0.29 |
-0.66 |
-0.06 |
0.49 |
1.00 |
5612 |
| beta[6] |
-0.06 |
0.31 |
-0.67 |
-0.07 |
0.56 |
1.00 |
5437 |


Petits puffins / Small shearwaters
Hors repro


| alpha[1, 1] |
-4.03 |
0.21 |
-4.48 |
-4.03 |
-3.65 |
1.09 |
309 |
| alpha[2, 1] |
-0.22 |
0.04 |
-0.29 |
-0.22 |
-0.15 |
1.00 |
28951 |
| alpha[1, 2] |
-4.31 |
0.22 |
-4.76 |
-4.30 |
-3.91 |
1.07 |
399 |
| alpha[2, 2] |
0.24 |
0.06 |
0.12 |
0.24 |
0.35 |
1.00 |
18264 |
| alpha[1, 3] |
-5.64 |
0.21 |
-6.09 |
-5.63 |
-5.25 |
1.08 |
310 |
| alpha[2, 3] |
0.69 |
0.04 |
0.61 |
0.69 |
0.77 |
1.00 |
10319 |
| beta[1] |
4.31 |
0.24 |
3.87 |
4.30 |
4.79 |
1.07 |
578 |
| beta[2] |
-0.17 |
0.18 |
-0.53 |
-0.17 |
0.17 |
1.00 |
7157 |
| beta[3] |
-0.91 |
0.22 |
-1.35 |
-0.91 |
-0.48 |
1.00 |
4541 |
| beta[4] |
0.38 |
0.19 |
0.01 |
0.38 |
0.75 |
1.00 |
6744 |
| beta[5] |
-0.55 |
0.14 |
-0.83 |
-0.55 |
-0.27 |
1.00 |
7768 |
| beta[6] |
0.98 |
0.20 |
0.59 |
0.98 |
1.39 |
1.00 |
4726 |


Repro


| alpha[1, 1] |
-5.68 |
0.20 |
-6.10 |
-5.67 |
-5.32 |
1.03 |
207 |
| alpha[2, 1] |
0.56 |
0.02 |
0.52 |
0.56 |
0.60 |
1.00 |
17925 |
| alpha[1, 2] |
-6.15 |
0.19 |
-6.56 |
-6.14 |
-5.79 |
1.04 |
198 |
| alpha[2, 2] |
0.42 |
0.02 |
0.39 |
0.42 |
0.46 |
1.00 |
22568 |
| alpha[1, 3] |
-5.37 |
0.20 |
-5.79 |
-5.36 |
-4.99 |
1.03 |
304 |
| alpha[2, 3] |
0.13 |
0.05 |
0.02 |
0.13 |
0.23 |
1.00 |
24959 |
| beta[1] |
6.21 |
0.21 |
5.82 |
6.20 |
6.64 |
1.03 |
337 |
| beta[2] |
0.38 |
0.10 |
0.18 |
0.38 |
0.58 |
1.00 |
21749 |
| beta[3] |
0.82 |
0.13 |
0.56 |
0.82 |
1.09 |
1.00 |
20199 |


Pufin de Scopoli / Scopoli’s shearwaters


| alpha[1, 1] |
-5.02 |
0.20 |
-5.44 |
-5.01 |
-4.64 |
1.01 |
466 |
| alpha[2, 1] |
0.01 |
0.04 |
-0.08 |
0.01 |
0.09 |
1.00 |
33184 |
| alpha[1, 2] |
-5.18 |
0.20 |
-5.60 |
-5.18 |
-4.81 |
1.01 |
457 |
| alpha[2, 2] |
0.43 |
0.03 |
0.36 |
0.43 |
0.49 |
1.00 |
27460 |
| alpha[1, 3] |
-4.80 |
0.28 |
-5.35 |
-4.79 |
-4.27 |
1.01 |
1788 |
| alpha[2, 3] |
0.62 |
0.15 |
0.33 |
0.62 |
0.93 |
1.00 |
23157 |
| beta[1] |
4.22 |
0.21 |
3.81 |
4.21 |
4.65 |
1.01 |
572 |
| beta[2] |
-0.76 |
0.13 |
-1.01 |
-0.76 |
-0.51 |
1.00 |
10270 |
| beta[3] |
-0.05 |
0.10 |
-0.25 |
-0.06 |
0.15 |
1.00 |
11183 |
| beta[4] |
1.86 |
0.16 |
1.55 |
1.86 |
2.18 |
1.00 |
10035 |
| beta[5] |
-0.99 |
0.14 |
-1.26 |
-0.99 |
-0.72 |
1.00 |
9229 |


Sternes caugeks / Sandwich terns
Hors repro


| alpha[1, 1] |
-3.53 |
0.23 |
-4.02 |
-3.53 |
-3.10 |
1.01 |
617 |
| alpha[2, 1] |
0.38 |
0.07 |
0.25 |
0.38 |
0.52 |
1.00 |
8354 |
| alpha[1, 2] |
-3.61 |
0.29 |
-4.19 |
-3.60 |
-3.06 |
1.01 |
1486 |
| alpha[2, 2] |
0.33 |
0.13 |
0.07 |
0.33 |
0.59 |
1.00 |
20393 |
| alpha[1, 3] |
-6.20 |
0.25 |
-6.71 |
-6.19 |
-5.73 |
1.01 |
760 |
| alpha[2, 3] |
0.54 |
0.09 |
0.36 |
0.54 |
0.73 |
1.00 |
16781 |
| beta[1] |
3.59 |
0.24 |
3.13 |
3.59 |
4.10 |
1.01 |
787 |
| beta[2] |
0.68 |
0.20 |
0.30 |
0.68 |
1.07 |
1.00 |
6736 |
| beta[3] |
-0.19 |
0.24 |
-0.65 |
-0.19 |
0.28 |
1.00 |
5963 |
| beta[4] |
-0.17 |
0.13 |
-0.44 |
-0.17 |
0.08 |
1.00 |
7903 |
| beta[5] |
0.49 |
0.17 |
0.16 |
0.49 |
0.82 |
1.00 |
6888 |
| beta[6] |
-0.60 |
0.19 |
-0.97 |
-0.60 |
-0.24 |
1.00 |
7211 |


Repro


| alpha[1, 1] |
-3.73 |
0.22 |
-4.16 |
-3.72 |
-3.31 |
1 |
725 |
| alpha[2, 1] |
0.81 |
0.05 |
0.71 |
0.81 |
0.91 |
1 |
11289 |
| alpha[1, 2] |
-5.14 |
0.22 |
-5.57 |
-5.14 |
-4.71 |
1 |
713 |
| alpha[2, 2] |
0.60 |
0.04 |
0.53 |
0.60 |
0.68 |
1 |
14628 |
| alpha[1, 3] |
-4.84 |
0.31 |
-5.45 |
-4.84 |
-4.25 |
1 |
2478 |
| alpha[2, 3] |
0.77 |
0.25 |
0.30 |
0.77 |
1.27 |
1 |
30648 |
| beta[1] |
2.15 |
0.25 |
1.66 |
2.15 |
2.65 |
1 |
949 |
| beta[2] |
-0.38 |
0.29 |
-0.96 |
-0.38 |
0.19 |
1 |
4061 |
| beta[3] |
1.36 |
0.22 |
0.95 |
1.36 |
1.80 |
1 |
3754 |
| beta[4] |
-0.71 |
0.31 |
-1.32 |
-0.70 |
-0.12 |
1 |
3444 |
| beta[5] |
0.00 |
0.24 |
-0.47 |
0.00 |
0.47 |
1 |
3227 |
| beta[6] |
-0.82 |
0.17 |
-1.14 |
-0.82 |
-0.48 |
1 |
4351 |


Sterne pierregarin / Common tern


| alpha[1, 1] |
-3.66 |
0.30 |
-4.28 |
-3.65 |
-3.11 |
1 |
1006 |
| alpha[2, 1] |
0.45 |
0.10 |
0.25 |
0.45 |
0.66 |
1 |
21122 |
| alpha[1, 2] |
-3.82 |
0.29 |
-4.41 |
-3.81 |
-3.29 |
1 |
904 |
| alpha[2, 2] |
0.32 |
0.06 |
0.20 |
0.32 |
0.43 |
1 |
20691 |
| beta[1] |
1.69 |
0.30 |
1.14 |
1.68 |
2.31 |
1 |
1002 |
| beta[2] |
-0.24 |
0.18 |
-0.59 |
-0.23 |
0.10 |
1 |
9241 |
| beta[3] |
0.27 |
0.16 |
-0.05 |
0.27 |
0.59 |
1 |
8956 |
| beta[4] |
-0.81 |
0.21 |
-1.22 |
-0.80 |
-0.41 |
1 |
9571 |


Labbe


| alpha[1, 1] |
-2.17 |
0.42 |
-3.06 |
-2.15 |
-1.39 |
1.02 |
776 |
| alpha[2, 1] |
0.45 |
0.13 |
0.21 |
0.45 |
0.70 |
1.00 |
24950 |
| beta[1] |
0.51 |
0.38 |
-0.17 |
0.49 |
1.33 |
1.02 |
744 |
| beta[2] |
-0.52 |
0.31 |
-1.15 |
-0.51 |
0.06 |
1.00 |
3992 |
| beta[3] |
-0.43 |
0.20 |
-0.83 |
-0.42 |
-0.04 |
1.00 |
4567 |
| beta[4] |
0.19 |
0.17 |
-0.14 |
0.19 |
0.53 |
1.00 |
4252 |
| beta[5] |
-0.68 |
0.36 |
-1.39 |
-0.68 |
0.02 |
1.00 |
4424 |
| beta[6] |
0.44 |
0.37 |
-0.28 |
0.44 |
1.16 |
1.00 |
4357 |

